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PtH2O2lipids
This is thereleased version of PtH2O2lipids; for the devel version, seePtH2O2lipids.
P. tricornutum HPLC-ESI-MS Lipid Data from van Creveld et al. (2015)
Bioconductor version: Release (3.22)
Annotated HPLC-ESI-MS lipid data in positive ionization mode from an experiment in which cultures of the marine diatom Phaeodactylum tricornutum were treated with various concentrations of hydrogen peroxide (H2O2) to induce oxidative stress. The experiment is described in Graff van Creveld, et al., 2015, "Early perturbation in mitochondria redox homeostasis in response to environmental stress predicts cell fate in diatoms," ISME Journal 9:385-395. PtH2O2lipids consists of two objects: A CAMERA xsAnnotate object (ptH2O2lipids$xsAnnotate) and LOBSTAHS LOBSet object (ptH2O2lipids$xsAnnotate$LOBSet). The LOBSet includes putative compound assignments from the default LOBSTAHS database. Isomer annotation is recorded in three other LOBSet slots.
Author: Shiri Graff van Creveld [aut], Shilo Rosenwasser [aut], Daniella Schatz [aut], Ilan Koren [aut], Assaf Vardi [aut], James Collins [cre]
Maintainer: James Collins <james.r.collins at aya.yale.edu>
citation("PtH2O2lipids")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("PtH2O2lipids")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
| Reference Manual | |
| NEWS | Text |
| LICENSE | Text |
Details
| biocViews | CellCulture,ExperimentData,MassSpectrometryData,Phaeodactylum_tricornutum_data,ReproducibleResearch |
| Version | 1.36.0 |
| License | MIT + fileLICENSE |
| Depends | R (>= 3.3),xcms,CAMERA,LOBSTAHS, methods, utils |
| Imports | |
| System Requirements | |
| URL | http://dx.doi.org/10.1038/ismej.2014.136https://github.com/vanmooylipidomics/PtH2O2lipidshttp://www.whoi.edu/page.do?pid=133616&tid=282&cid=192529 |
| Bug Reports | https://github.com/vanmooylipidomics/PtH2O2lipids/issues/new |
See More
| Suggests | gplots,RColorBrewer,cluster,vegan |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | LOBSTAHS |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | PtH2O2lipids_1.36.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/PtH2O2lipids |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/PtH2O2lipids |
| Package Short Url | https://bioconductor.org/packages/PtH2O2lipids/ |
| Package Downloads Report | Download Stats |