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MethylSeqData
This is thereleased version of MethylSeqData; for the devel version, seeMethylSeqData.
Collection of Public DNA Methylation Sequencing Datasets
Bioconductor version: Release (3.22)
Base-level (i.e. cytosine-level) counts for a collection of public bisulfite-seq datasets (e.g., WGBS and RRBS), provided as SummarizedExperiment objects with sample- and base-level metadata.
Author: Peter Hickey [aut, cre]
Maintainer: Peter Hickey <peter.hickey at gmail.com>
Citation (from within R, enter
citation("MethylSeqData")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("MethylSeqData")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MethylSeqData")| User's Guide | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData,ExperimentHub,Homo_sapiens_Data,MethylSeqData,Mus_musculus_Data,SequencingData |
| Version | 1.20.0 |
| License | CC0 |
| Depends | SummarizedExperiment |
| Imports | ExperimentHub,HDF5Array,rhdf5,GenomeInfoDb,S4Vectors,GenomicRanges, stats,IRanges, utils |
| System Requirements | |
| URL |
See More
| Suggests | BiocFileCache,BiocStyle,data.table,knitr,rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | MethylSeqData_1.20.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/MethylSeqData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MethylSeqData |
| Package Short Url | https://bioconductor.org/packages/MethylSeqData/ |
| Package Downloads Report | Download Stats |