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LRcellTypeMarkers
This is thereleased version of LRcellTypeMarkers; for the devel version, seeLRcellTypeMarkers.
Marker gene information for LRcell R Bioconductor package
Bioconductor version: Release (3.22)
This is an external ExperimentData package for LRcell. This data package contains the gene enrichment scores calculated from scRNA-seq dataset which indicates the gene enrichment of each cell type in certain brain region. LRcell package is used to identify specific sub-cell types that drives the changes observed in a bulk RNA-seq differential gene expression experiment. For more details, please visit: https://github.com/marvinquiet/LRcell.
Author: Wenjing Ma [cre, aut]
ORCID: 0000-0001-8757-651X
Maintainer: Wenjing Ma <wenjing.ma at emory.edu>
citation("LRcellTypeMarkers")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("LRcellTypeMarkers")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("LRcellTypeMarkers")| LRcellTypeMarkers: Marker gene information for LRcell R Bioconductor package using Bioconductor's ExperimentHub | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | ExperimentData,ExperimentHub,ExpressionData,PackageTypeData,RNASeqData,SingleCellData |
| Version | 1.18.0 |
| License | MIT + fileLICENSE |
| Depends | R (>= 4.1) |
| Imports | ExperimentHub |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/marvinquiet/LRcellTypeMarkers/issues |
See More
| Suggests | LRcell,BiocStyle,knitr,rmarkdown,roxygen2,testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | LRcell |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | LRcellTypeMarkers_1.18.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/LRcellTypeMarkers |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/LRcellTypeMarkers |
| Package Short Url | https://bioconductor.org/packages/LRcellTypeMarkers/ |
| Package Downloads Report | Download Stats |