HiBED
This is thereleased version of HiBED; for the devel version, seeHiBED.
HiBED
Bioconductor version: Release (3.22)
Hierarchical deconvolution for extensive cell type resolution in the human brain using DNA methylation. The HiBED deconvolution estimates proportions up to 7 cell types (GABAergic neurons, glutamatergic neurons, astrocytes, microglial cells, oligodendrocytes, endothelial cells, and stromal cells) in bulk brain tissues.
Author: Ze Zhang [cre, aut]
ORCID: 0000-0001-9854-5823, Lucas A. Salas [aut]
Maintainer: Ze Zhang <ze.zhang.gr at dartmouth.edu>
citation("HiBED")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("HiBED")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HiBED")| HiBED | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData,Genome,Homo_sapiens_Data,MethylationArrayData,MicroarrayData,PackageTypeData,Tissue |
| Version | 1.8.0 |
| License | GPL-3 |
| Depends | R (>= 3.5.0) |
| Imports | dplyr,FlowSorted.Blood.EPIC,tibble,FlowSorted.DLPFC.450k,minfi, utils,AnnotationHub,SummarizedExperiment |
| System Requirements | |
| URL | https://github.com/SalasLab/HiBED |
| Bug Reports | https://github.com/SalasLab/HiBED/issues. |
See More
| Suggests | knitr,rmarkdown,testthat,IlluminaHumanMethylation450kmanifest |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | HiBED_1.8.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/HiBED |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/HiBED |
| Package Short Url | https://bioconductor.org/packages/HiBED/ |
| Package Downloads Report | Download Stats |