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HarmonizedTCGAData
This is thereleased version of HarmonizedTCGAData; for the devel version, seeHarmonizedTCGAData.
Processed Harmonized TCGA Data of Five Selected Cancer Types
Bioconductor version: Release (3.22)
This package contains the processed harmonized TCGA data of five cancer types used in "Tianle Ma and Aidong Zhang, Integrate Multi-omic Data Using Affinity Network Fusion (ANF) for Cancer Patient Clustering".
Author: Tianle Ma
Maintainer: Tianle Ma <tianlema at buffalo.edu>
Citation (from within R, enter
citation("HarmonizedTCGAData")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("HarmonizedTCGAData")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HarmonizedTCGAData")| Patient Affinity Matrices Derived from Harmonized TCGA Dataset | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CancerData,ExperimentData,ReproducibleResearch |
| Version | 1.32.0 |
| License | GPL-3 |
| Depends | R (>= 3.4.0) |
| Imports | ExperimentHub |
| System Requirements | |
| URL |
See More
| Suggests | AnnotationHub,knitr,rmarkdown,igraph,survival,ANF, stats,testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | HarmonizedTCGAData_1.32.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/HarmonizedTCGAData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/HarmonizedTCGAData |
| Package Short Url | https://bioconductor.org/packages/HarmonizedTCGAData/ |
| Package Downloads Report | Download Stats |