DeSousa2013

This is thereleased version of DeSousa2013; for the devel version, seeDeSousa2013.

Poor prognosis colon cancer is defined by a molecularly distinct subtype and precursor lesion

Bioconductor version: Release (3.22)

This package reproduces the main pipeline to analyze the AMC-AJCCII-90 microarray data set in De Sousa et al. accepted by Nature Medicine in 2013.

Author: Xin Wang <Xin.Wang at cruk.cam.ac.uk>

Maintainer: Xin Wang <Xin.Wang at cruk.cam.ac.uk>

Citation (from within R, entercitation("DeSousa2013")):

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))    install.packages("BiocManager")BiocManager::install("DeSousa2013")

For older versions of R, please refer to the appropriateBioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DeSousa2013")

Main vignette:Poor prognosis colon cancer is defined by a molecular distinct subtype and develops from serrated precursor lesions	PDF	R Script
Reference Manual	PDF

biocViews	CancerData,ColonCancerData,ExperimentData,MicroarrayData
Version	1.46.0
License	Artistic-2.0
Depends	R (>= 2.15)
Imports	affy,frma,frmaTools,hgu133plus2.db,hgu133plus2frmavecs,sva,rgl,ConsensusClusterPlus,cluster,siggenes,ROCR,pamr,survival,gplots,AnnotationDbi,Biobase
System Requirements
URL

FollowInstallation instructions to use this package in your R session.

Source Package	DeSousa2013_1.46.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/DeSousa2013
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/DeSousa2013
Package Short Url	https://bioconductor.org/packages/DeSousa2013/
Package Downloads Report	Download Stats