ChIPDBData

This is thereleased version of ChIPDBData; for the devel version, seeChIPDBData.

ChIP-seq Target Databases for TFEA.ChIP

Bioconductor version: Release (3.22)

Provides curated gene target databases derived from ChIP-seq datasets, formatted as ChIPDB objects for use with TFEA.ChIP.

Author: Yosra Berrouayel [aut, cre] ORCID: 0000-0002-0768-5933, Luis del Peso [aut] ORCID: 0000-0003-4014-5688

Maintainer: Yosra Berrouayel <yosraberrouayel at gmail.com>

Citation (from within R, entercitation("ChIPDBData")):

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))    install.packages("BiocManager")BiocManager::install("ChIPDBData")

For older versions of R, please refer to the appropriateBioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ChIPDBData")

biocViews	ENCODE,ExperimentData,ExperimentHub,Homo_sapiens_Data,SequencingData
Version	1.0.0
License	GPL-3
Depends
Imports	ExperimentHub
System Requirements
URL	https://github.com/yberda/ChIPDBData
Bug Reports	https://github.com/yberda/ChIPDBData/issues

Suggests	knitr,rmarkdown,BiocStyle,AnnotationHub,TFEA.ChIP,DESeq2,testthat (>= 3.0.0)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

FollowInstallation instructions to use this package in your R session.

Source Package	ChIPDBData_1.0.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/ChIPDBData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ChIPDBData
Package Short Url	https://bioconductor.org/packages/ChIPDBData/
Package Downloads Report	Download Stats