KEGGREST
This is thereleased version of KEGGREST; for the devel version, seeKEGGREST.
Client-side REST access to the Kyoto Encyclopedia of Genes and Genomes (KEGG)
Bioconductor version: Release (3.22)
A package that provides a client interface to the Kyoto Encyclopedia of Genes and Genomes (KEGG) REST API. Only for academic use by academic users belonging to academic institutions (see
Author: Dan Tenenbaum [aut], Bioconductor Package Maintainer [aut, cre], Martin Morgan [ctb], Kozo Nishida [ctb], Marcel Ramos [ctb], Kristina Riemer [ctb], Lori Shepherd [ctb], Jeremy Volkening [ctb]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
citation("KEGGREST")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("KEGGREST")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("KEGGREST")| Accessing the KEGG REST API | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Annotation,KEGG,Pathways,Software,ThirdPartyClient |
| Version | 1.50.0 |
| In Bioconductor since | BioC 2.12 (R-3.0) (12.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.5.0) |
| Imports | methods,httr,png,Biostrings |
| System Requirements | |
| URL | https://bioconductor.org/packages/KEGGREST |
| Bug Reports | https://github.com/Bioconductor/KEGGREST/issues |
See More
| Suggests | RUnit,BiocGenerics,BiocStyle,knitr,markdown |
| Linking To | |
| Enhances | |
| Depends On Me | ROntoTools,Hiiragi2013 |
| Imports Me | ADAM,adSplit,AnnotationDbi,attract,BiocSet,ChIPpeakAnno,CNEr,EnrichmentBrowser,FELLA,funOmics,gage,ginmappeR,MetaboDynamics,MetaboSignal,MWASTools,PADOG,pairkat,pathview,SBGNview,SMITE,terapadog,transomics2cytoscape,YAPSA,WayFindR |
| Suggests Me | anansi,Category,categoryCompare,dmGsea,gatom,GenomicRanges,globaltest,iSEEu,MLP,padma,rGREAT,RTopper,SomaScan.db,CALANGO,ggpicrust2,maGUI,phoenics,ReporterScore,scDiffCom |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | KEGGREST_1.50.0.tar.gz |
| Windows Binary (x86_64) | KEGGREST_1.50.0.zip |
| macOS Binary (x86_64) | KEGGREST_1.50.0.tgz |
| macOS Binary (arm64) | KEGGREST_1.50.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/KEGGREST |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/KEGGREST |
| Bioc Package Browser | https://code.bioconductor.org/browse/KEGGREST/ |
| Package Short Url | https://bioconductor.org/packages/KEGGREST/ |
| Package Downloads Report | Download Stats |