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excluderanges
This is thereleased version of excluderanges; for the devel version, seeexcluderanges.
Genomic coordinates of problematic genomic regions
Bioconductor version: Release (3.22)
Genomic coordinates of problematic genomic regions that should be avoided when working with genomic data. GRanges of exclusion regions (formerly known as blacklisted), centromeres, telomeres, known heterochromatin regions, etc. (UCSC 'gap' table data). Primarily for human and mouse genomes, hg19/hg38 and mm9/mm10 genome assemblies.
Author: Mikhail Dozmorov [aut, cre]
ORCID: 0000-0002-0086-8358, Eric Davis [aut], Wancen Mu [aut], Stuart Lee [aut], Tim Triche [aut], Douglas Phanstiel [aut], Michael Love [aut]
Maintainer: Mikhail Dozmorov <mikhail.dozmorov at gmail.com>
citation("excluderanges")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("excluderanges")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("excluderanges")| excluderanges | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | AnnotationData,AnnotationHub,FunctionalAnnotation,GenomicSequence |
| Version | 0.99.10 |
| License | MIT + fileLICENSE |
| Depends | GenomicRanges |
| Imports | |
| System Requirements | |
| URL | https://github.com/dozmorovlab/excluderanges |
| Bug Reports | https://github.com/dozmorovlab/excluderanges/issues |
See More
| Suggests | BiocStyle,knitr,RefManageR,rmarkdown,ggridges,httr,readr,pheatmap,GenomeInfoDb,rtracklayer,AnnotationHub |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | nullranges |
| Links To Me |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | excluderanges_0.99.10.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Package Short Url | https://bioconductor.org/packages/excluderanges/ |
| Package Downloads Report | Download Stats |