TENET.AnnotationHub

This is thereleased version of TENET.AnnotationHub; for the devel version, seeTENET.AnnotationHub.

Annotation data for the TENET package

DOI: 10.18129/B9.bioc.TENET.AnnotationHub

Bioconductor version: Release (3.22)

AnnotationHub package containing datasets for use in the TENET package. Includes GenomicRanges objects representing putative enhancer, promoter, and open chromatin regions. All included datasets are aligned to the hg38 human genome.

Author: Rhie Lab at the University of Southern California [cre], Daniel Mullen [aut] ORCID: 0000-0002-7639-0549, Zexun Wu [aut] ORCID: 0000-0003-2566-1326, Ethan Nelson-Moore [aut] ORCID: 0009-0001-6903-9232, Suhn Rhie [aut] ORCID: 0000-0002-5522-5296

Maintainer: Rhie Lab at the University of Southern California <rhielab at gmail.com>

Citation (from within R, entercitation("TENET.AnnotationHub")):

Installation

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))    install.packages("BiocManager")BiocManager::install("TENET.AnnotationHub")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TENET.AnnotationHub")

Using the TENET.AnnotationHub datasets	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	AnnotationData,AnnotationHub,GenomicSequence,Homo_sapiens
Version	1.1.0
License	GPL-2
Depends	R (>= 4.4)
Imports	AnnotationHub,GenomicRanges
System Requirements
URL	https://github.com/rhielab/TENET.AnnotationHub
Bug Reports	https://github.com/rhielab/TENET.AnnotationHub/issues

Suggests	TENET,AnnotationHubData,testthat (>= 3.0.0),BiocManager,knitr,rmarkdown,BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	TENET
Links To Me

Package Archives

FollowInstallation instructions to use this package in your R session.

Source Package	TENET.AnnotationHub_1.1.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url	https://bioconductor.org/packages/TENET.AnnotationHub/
Package Downloads Report	Download Stats

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