BSgenome.Hsapiens.UCSC.hg19

This is thereleased version of BSgenome.Hsapiens.UCSC.hg19; for the devel version, seeBSgenome.Hsapiens.UCSC.hg19.

Full genome sequences for Homo sapiens (UCSC version hg19, based on GRCh37.p13)

Bioconductor version: Release (3.22)

Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg19, based on GRCh37.p13) and stored in Biostrings objects.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, entercitation("BSgenome.Hsapiens.UCSC.hg19")):

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))    install.packages("BiocManager")BiocManager::install("BSgenome.Hsapiens.UCSC.hg19")

For older versions of R, please refer to the appropriateBioconductor release.


Reference Manual	PDF

biocViews	AnnotationData,BSgenome,Genetics,Homo_sapiens
Version	1.4.3
License	Artistic-2.0
Depends	BSgenome(>= 1.54.0)
Imports	BSgenome
System Requirements
URL

Suggests
Linking To
Enhances
Depends On Me	CODEX,SCOPE,traseR,BSgenome.Hsapiens.UCSC.hg19.masked,annotation,sequencing,variants
Imports Me	appreci8R,cfDNAPro,circRNAprofiler,decompTumor2Sig,epiregulon,HiLDA,katdetectr,methodical,musicatk,RareVariantVis,RCAS,YAPSA,BSgenome.Hsapiens.UCSC.hg19.masked,SATS
Suggests Me	ATACseqQC,BadRegionFinder,Basic4Cseq,BBCAnalyzer,biovizBase,bnbc,CAGEr,ChIPpeakAnno,chromVAR,cigarillo,CNEr,CNVfilteR,CRISPRseek,DAMEfinder,DNAshapeR,EpiCompare,esATAC,FRASER,G4SNVHunter,gcapc,GenomicAlignments,GenomicFeatures,geomeTriD,ggbio,gmapR,GRaNIE,GreyListChIP,GUIDEseq,Gviz,h5vc,HiCDCPlus,InPAS,IntEREst,IsoformSwitchAnalyzeR,karyoploteR,maftools,MEDIPS,MesKit,MethReg,methrix,MinimumDistance,MiRaGE,motifbreakR,motifmatchr,MotifPeeker,motifTestR,MutationalPatterns,ORFik,OrganismDbi,pageRank,pipeFrame,plotgardener,plyranges,ProteoDisco,qsea,REMP,RiboCrypt,RiboProfiling,Rsamtools,RSVSim,rtracklayer,SGSeq,signeR,SigsPack,supersigs,svaNUMT,UMI4Cats,VariantAnnotation,wavClusteR,FDb.FANTOM4.promoters.hg19,FDb.UCSC.snp135common.hg19,FDb.UCSC.snp137common.hg19,SNPlocs.Hsapiens.dbSNP144.GRCh37,SNPlocs.Hsapiens.dbSNP155.GRCh37,XtraSNPlocs.Hsapiens.dbSNP144.GRCh37,sigminer
Links To Me

FollowInstallation instructions to use this package in your R session.

Source Package	BSgenome.Hsapiens.UCSC.hg19_1.4.3.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url	https://bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg19/
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