- Home
- Bioconductor 3.22
- Software Packages
- uncoverappLib
uncoverappLib
This is thereleased version of uncoverappLib; for the devel version, seeuncoverappLib.
Interactive graphical application for clinical assessment of sequence coverage at the base-pair level
Bioconductor version: Release (3.22)
a Shiny application containing a suite of graphical and statistical tools to support clinical assessment of low coverage regions.It displays three web pages each providing a different analysis module: Coverage analysis, calculate AF by allele frequency app and binomial distribution. uncoverAPP provides a statisticl summary of coverage given target file or genes name.
Author: Emanuela Iovino [cre, aut], Tommaso Pippucci [aut]
Maintainer: Emanuela Iovino <emanuela.iovino at unibo.it>
citation("uncoverappLib")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("uncoverappLib")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("uncoverappLib")| uncoverappLib | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Annotation,Coverage,Software,Visualization |
| Version | 1.20.0 |
| In Bioconductor since | BioC 3.12 (R-4.0) (5 years) |
| License | MIT + fileLICENSE |
| Depends | |
| Imports | markdown,shiny,shinyjs,shinyBS,shinyWidgets,shinycssloaders,DT,Gviz,Homo.sapiens,openxlsx,condformat,stringr,org.Hs.eg.db,TxDb.Hsapiens.UCSC.hg38.knownGene,BiocFileCache,rappdirs,TxDb.Hsapiens.UCSC.hg19.knownGene,rlist, utils,S4Vectors,EnsDb.Hsapiens.v75,EnsDb.Hsapiens.v86,OrganismDbi,processx,Rsamtools,GenomicRanges |
| System Requirements | |
| URL | https://github.com/Manuelaio/uncoverappLib |
| Bug Reports | https://github.com/Manuelaio/uncoverappLib/issues |
See More
| Suggests | BiocStyle,knitr,testthat,rmarkdown,dplyr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | uncoverappLib_1.20.0.tar.gz |
| Windows Binary (x86_64) | uncoverappLib_1.20.0.zip |
| macOS Binary (x86_64) | uncoverappLib_1.20.0.tgz |
| macOS Binary (arm64) | uncoverappLib_1.20.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/uncoverappLib |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/uncoverappLib |
| Bioc Package Browser | https://code.bioconductor.org/browse/uncoverappLib/ |
| Package Short Url | https://bioconductor.org/packages/uncoverappLib/ |
| Package Downloads Report | Download Stats |