tweeDEseq
This is thereleased version of tweeDEseq; for the devel version, seetweeDEseq.
RNA-seq data analysis using the Poisson-Tweedie family of distributions
Bioconductor version: Release (3.22)
Differential expression analysis of RNA-seq using the Poisson-Tweedie (PT) family of distributions. PT distributions are described by a mean, a dispersion and a shape parameter and include Poisson and NB distributions, among others, as particular cases. An important feature of this family is that, while the Negative Binomial (NB) distribution only allows a quadratic mean-variance relationship, the PT distributions generalizes this relationship to any orde.
Author: Dolors Pelegri-Siso [aut, cre]
ORCID: 0000-0002-5993-3003, Juan R. Gonzalez [aut] ORCID: 0000-0003-3267-2146, Mikel Esnaola [aut], Robert Castelo [aut]
Maintainer: Dolors Pelegri-Siso <dolors.pelegri at isglobal.org>
citation("tweeDEseq")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("tweeDEseq")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("tweeDEseq")| tweeDEseq: analysis of RNA-seq data using the Poisson-Tweedie family of distributions | R Script | |
| Reference Manual |
Details
| biocViews | DNASeq,DifferentialExpression,ImmunoOncology,RNASeq,Sequencing,Software,StatisticalMethod |
| Version | 1.56.0 |
| In Bioconductor since | BioC 2.9 (R-2.14) (14 years) |
| License | GPL (>= 2) |
| Depends | R (>= 4.3.0) |
| Imports | Rcpp (>= 1.0.10),MASS,limma,edgeR, parallel,cqn, grDevices, graphics, stats, utils |
| System Requirements | |
| URL | https://github.com/isglobal-brge/tweeDEseq/ |
| Bug Reports | https://github.com/isglobal-brge/tweeDEseq/issues |
See More
| Suggests | tweeDEseqCountData,xtable |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | ptmixed |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | tweeDEseq_1.56.0.tar.gz |
| Windows Binary (x86_64) | tweeDEseq_1.56.0.zip |
| macOS Binary (x86_64) | tweeDEseq_1.56.0.tgz |
| macOS Binary (arm64) | tweeDEseq_1.56.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/tweeDEseq |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/tweeDEseq |
| Bioc Package Browser | https://code.bioconductor.org/browse/tweeDEseq/ |
| Package Short Url | https://bioconductor.org/packages/tweeDEseq/ |
| Package Downloads Report | Download Stats |