tRNA
This is thereleased version of tRNA; for the devel version, seetRNA.
Analyzing tRNA sequences and structures
Bioconductor version: Release (3.22)
The tRNA package allows tRNA sequences and structures to be accessed and used for subsetting. In addition, it provides visualization tools to compare feature parameters of multiple tRNA sets and correlate them to additional data. The tRNA package uses GRanges objects as inputs requiring only few additional column data sets.
Author: Felix GM Ernst [aut, cre]
ORCID: 0000-0001-5064-0928
Maintainer: Felix GM Ernst <felix.gm.ernst at outlook.com>
citation("tRNA")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("tRNA")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("tRNA")| tRNA | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Software,Visualization |
| Version | 1.28.0 |
| In Bioconductor since | BioC 3.8 (R-3.5) (7 years) |
| License | GPL-3 + fileLICENSE |
| Depends | R (>= 3.5),GenomicRanges,Structstrings |
| Imports | stringr,S4Vectors, methods,BiocGenerics,IRanges,XVector,Biostrings,Modstrings,ggplot2,scales |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/FelixErnst/tRNA/issues |
See More
| Suggests | knitr,rmarkdown,testthat,BiocStyle,tRNAscanImport |
| Linking To | |
| Enhances | |
| Depends On Me | tRNAdbImport,tRNAscanImport |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | tRNA_1.28.0.tar.gz |
| Windows Binary (x86_64) | tRNA_1.28.0.zip |
| macOS Binary (x86_64) | tRNA_1.28.0.tgz |
| macOS Binary (arm64) | tRNA_1.28.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/tRNA |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/tRNA |
| Bioc Package Browser | https://code.bioconductor.org/browse/tRNA/ |
| Package Short Url | https://bioconductor.org/packages/tRNA/ |
| Package Downloads Report | Download Stats |