switchde
This is thereleased version of switchde; for the devel version, seeswitchde.
Switch-like differential expression across single-cell trajectories
Bioconductor version: Release (3.22)
Inference and detection of switch-like differential expression across single-cell RNA-seq trajectories.
Author: Kieran Campbell [aut, cre]
Maintainer: Kieran Campbell <kieranrcampbell at gmail.com>
Citation (from within R, enter
citation("switchde")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("switchde")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("switchde")| An overview of the switchde package | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DifferentialExpression,GeneExpression,ImmunoOncology,RNASeq,Regression,SingleCell,Software,Transcriptomics |
| Version | 1.36.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (9 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.4),SingleCellExperiment |
| Imports | SummarizedExperiment,dplyr,ggplot2, methods, stats |
| System Requirements | |
| URL | https://github.com/kieranrcampbell/switchde |
| Bug Reports | https://github.com/kieranrcampbell/switchde |
See More
| Suggests | knitr,rmarkdown,BiocStyle,testthat,numDeriv,tidyr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | switchde_1.36.0.tar.gz |
| Windows Binary (x86_64) | switchde_1.36.0.zip |
| macOS Binary (x86_64) | switchde_1.36.0.tgz |
| macOS Binary (arm64) | switchde_1.36.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/switchde |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/switchde |
| Bioc Package Browser | https://code.bioconductor.org/browse/switchde/ |
| Package Short Url | https://bioconductor.org/packages/switchde/ |
| Package Downloads Report | Download Stats |