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sevenbridges
This is thereleased version of sevenbridges; for the devel version, seesevenbridges.
Seven Bridges Platform API Client and Common Workflow Language Tool Builder in R
Bioconductor version: Release (3.22)
R client and utilities for Seven Bridges platform API, from Cancer Genomics Cloud to other Seven Bridges supported platforms.
Author: Phil Webster [aut, cre], Soner Koc [aut]
ORCID: 0000-0002-0772-6600, Nan Xiao [aut], Tengfei Yin [aut], Dusan Randjelovic [ctb], Emile Young [ctb], Velsera [cph, fnd]
Maintainer: Phil Webster <phil.webster at velsera.com>
citation("sevenbridges")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("sevenbridges")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("sevenbridges")| Complete Guide for Seven Bridges API R Client | HTML | R Script |
| Creating Your Docker Container and Command Line Interface (with docopt) | HTML | R Script |
| Describe and Execute CWL Tools/Workflows in R | HTML | R Script |
| Find Data on CGC via Data Browser and Datasets API | HTML | R Script |
| IDE Container: RStudio Server, Shiny Server, and More | HTML | R Script |
| Master Tutorial: Use R for Cancer Genomics Cloud | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DataImport,Software,ThirdPartyClient |
| Version | 1.40.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (9.5 years) |
| License | Apache License 2.0 | fileLICENSE |
| Depends | methods, utils, stats |
| Imports | httr,jsonlite,yaml,objectProperties,stringr,S4Vectors,docopt,curl,uuid,data.table |
| System Requirements | |
| URL | https://www.sevenbridges.comhttps://sbg.github.io/sevenbridges-r/https://github.com/sbg/sevenbridges-r |
| Bug Reports | https://github.com/sbg/sevenbridges-r/issues |
See More
| Suggests | knitr,rmarkdown,testthat,readr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | sevenbridges_1.40.0.tar.gz |
| Windows Binary (x86_64) | sevenbridges_1.40.0.zip |
| macOS Binary (x86_64) | sevenbridges_1.40.0.tgz |
| macOS Binary (arm64) | sevenbridges_1.40.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/sevenbridges |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/sevenbridges |
| Bioc Package Browser | https://code.bioconductor.org/browse/sevenbridges/ |
| Package Short Url | https://bioconductor.org/packages/sevenbridges/ |
| Package Downloads Report | Download Stats |