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seqPattern
This is thereleased version of seqPattern; for the devel version, seeseqPattern.
Visualising oligonucleotide patterns and motif occurrences across a set of sorted sequences
Bioconductor version: Release (3.22)
Visualising oligonucleotide patterns and sequence motifs occurrences across a large set of sequences centred at a common reference point and sorted by a user defined feature.
Author: Vanja Haberle <vanja.haberle at gmail.com>
Maintainer: Vanja Haberle <vanja.haberle at gmail.com>
Citation (from within R, enter
citation("seqPattern")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("seqPattern")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("seqPattern")| seqPattern | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | SequenceMatching,Software,Visualization |
| Version | 1.42.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (10.5 years) |
| License | GPL-3 |
| Depends | methods, R (>= 2.15.0) |
| Imports | Biostrings,GenomicRanges,IRanges,KernSmooth,plotrix |
| System Requirements | |
| URL |
See More
| Suggests | BSgenome.Drerio.UCSC.danRer7,CAGEr,RUnit,BiocGenerics,BiocStyle |
| Linking To | |
| Enhances | parallel |
| Depends On Me | |
| Imports Me | genomation |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | seqPattern_1.42.0.tar.gz |
| Windows Binary (x86_64) | seqPattern_1.42.0.zip |
| macOS Binary (x86_64) | seqPattern_1.42.0.tgz |
| macOS Binary (arm64) | seqPattern_1.42.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/seqPattern |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/seqPattern |
| Bioc Package Browser | https://code.bioconductor.org/browse/seqPattern/ |
| Package Short Url | https://bioconductor.org/packages/seqPattern/ |
| Package Downloads Report | Download Stats |