selectKSigs

This is thereleased version of selectKSigs; for the devel version, seeselectKSigs.

Selecting the number of mutational signatures using a perplexity-based measure and cross-validation

Bioconductor version: Release (3.22)

A package to suggest the number of mutational signatures in a collection of somatic mutations using calculating the cross-validated perplexity score.

Author: Zhi Yang [aut, cre], Yuichi Shiraishi [ctb]

Maintainer: Zhi Yang <zyang895 at gmail.com>

Citation (from within R, entercitation("selectKSigs")):

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))    install.packages("BiocManager")BiocManager::install("selectKSigs")

For older versions of R, please refer to the appropriateBioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("selectKSigs")

biocViews	Clustering,Sequencing,Software,SomaticMutation,StatisticalMethod
Version	1.22.0
In Bioconductor since	BioC 3.11 (R-4.0) (5.5 years)
License	GPL-3
Depends	R (>= 3.6)
Imports	HiLDA,magrittr,gtools, methods,Rcpp
System Requirements
URL	https://github.com/USCbiostats/selectKSigs
Bug Reports	https://github.com/USCbiostats/HiLDA/selectKSigs

Suggests	knitr,rmarkdown,testthat,BiocStyle,ggplot2,dplyr,tidyr
Linking To	Rcpp
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

FollowInstallation instructions to use this package in your R session.

Source Package	selectKSigs_1.22.0.tar.gz
Windows Binary (x86_64)	selectKSigs_1.22.0.zip
macOS Binary (x86_64)	selectKSigs_1.22.0.tgz
macOS Binary (arm64)	selectKSigs_1.22.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/selectKSigs
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/selectKSigs
Bioc Package Browser	https://code.bioconductor.org/browse/selectKSigs/
Package Short Url	https://bioconductor.org/packages/selectKSigs/
Package Downloads Report	Download Stats