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scFeatureFilter
This is thereleased version of scFeatureFilter; for the devel version, seescFeatureFilter.
A correlation-based method for quality filtering of single-cell RNAseq data
Bioconductor version: Release (3.22)
An R implementation of the correlation-based method developed in the Joshi laboratory to analyse and filter processed single-cell RNAseq data. It returns a filtered version of the data containing only genes expression values unaffected by systematic noise.
Author: Angeles Arzalluz-Luque [aut], Guillaume Devailly [aut, cre], Anagha Joshi [aut]
Maintainer: Guillaume Devailly <gdevailly at hotmail.com>
citation("scFeatureFilter")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("scFeatureFilter")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("scFeatureFilter")| Introduction to scFeatureFilter | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | GeneExpression,ImmunoOncology,Preprocessing,RNASeq,SingleCell,Software |
| Version | 1.30.0 |
| In Bioconductor since | BioC 3.7 (R-3.5) (7.5 years) |
| License | MIT + fileLICENSE |
| Depends | R (>= 3.6) |
| Imports | dplyr (>= 0.7.3),ggplot2 (>= 2.1.0),magrittr (>= 1.5),rlang (>= 0.1.2),tibble (>= 1.3.4), stats, methods |
| System Requirements | |
| URL |
See More
| Suggests | testthat,knitr,rmarkdown,BiocStyle,SingleCellExperiment,SummarizedExperiment,scRNAseq,cowplot |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | scFeatureFilter_1.30.0.tar.gz |
| Windows Binary (x86_64) | scFeatureFilter_1.30.0.zip |
| macOS Binary (x86_64) | scFeatureFilter_1.30.0.tgz |
| macOS Binary (arm64) | scFeatureFilter_1.30.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/scFeatureFilter |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/scFeatureFilter |
| Bioc Package Browser | https://code.bioconductor.org/browse/scFeatureFilter/ |
| Package Short Url | https://bioconductor.org/packages/scFeatureFilter/ |
| Package Downloads Report | Download Stats |