- Home
- Bioconductor 3.22
- Software Packages
- scClassify
scClassify
This is thereleased version of scClassify; for the devel version, seescClassify.
scClassify: single-cell Hierarchical Classification
Bioconductor version: Release (3.22)
scClassify is a multiscale classification framework for single-cell RNA-seq data based on ensemble learning and cell type hierarchies, enabling sample size estimation required for accurate cell type classification and joint classification of cells using multiple references.
Author: Yingxin Lin
Maintainer: Yingxin Lin <yingxin.lin at sydney.edu.au>
citation("scClassify")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("scClassify")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("scClassify")| pretrainedModel | HTML | R Script |
| scClassify | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Classification,GeneExpression,SingleCell,Software |
| Version | 1.22.0 |
| In Bioconductor since | BioC 3.11 (R-4.0) (5.5 years) |
| License | GPL-3 |
| Depends | R (>= 4.0) |
| Imports | S4Vectors,limma,ggraph,igraph, methods,cluster,minpack.lm,mixtools,BiocParallel,proxy,proxyC,Matrix,ggplot2,hopach,diptest,mgcv, stats, graphics,statmod,Cepo |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/SydneyBioX/scClassify/issues |
See More
| Suggests | knitr,rmarkdown,BiocStyle,pkgdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | scClassify_1.22.0.tar.gz |
| Windows Binary (x86_64) | scClassify_1.22.0.zip |
| macOS Binary (x86_64) | scClassify_1.22.0.tgz |
| macOS Binary (arm64) | scClassify_1.22.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/scClassify |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/scClassify |
| Bioc Package Browser | https://code.bioconductor.org/browse/scClassify/ |
| Package Short Url | https://bioconductor.org/packages/scClassify/ |
| Package Downloads Report | Download Stats |