rigvf
This is thereleased version of rigvf; for the devel version, seerigvf.
R interface to the IGVF Catalog
Bioconductor version: Release (3.22)
The IGVF Catalog provides data on the impact of genomic variants on function. The `rigvf` package provides an interface to the IGVF Catalog, allowing easy integration with Bioconductor resources.
Author: Martin Morgan [aut]
ORCID: 0000-0002-5874-8148, Michael Love [aut, cre] ORCID: 0000-0001-8401-0545, NIH NHGRI UM1HG012003 [fnd]
Maintainer: Michael Love <michaelisaiahlove at gmail.com>
citation("rigvf")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("rigvf")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rigvf")| Accessing data from the IGVF Catalog | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Annotation,FunctionalGenomics,GeneRegulation,GeneTarget,GenomicVariation,Software,ThirdPartyClient,VariantAnnotation |
| Version | 1.2.2 |
| In Bioconductor since | BioC 3.21 (R-4.5) (0.5 years) |
| License | MIT + fileLICENSE |
| Depends | R (>= 4.1.0) |
| Imports | methods,httr2,rjsoncons,dplyr,tidyr,rlang,memoise,cachem,whisker,jsonlite,GenomicRanges,IRanges,Seqinfo |
| System Requirements | |
| URL | https://IGVF.github.io/rigvf |
| Bug Reports | https://github.com/IGVF/rigvf/issues |
See More
| Suggests | knitr,rmarkdown,testthat (>= 3.0.0),plyranges,plotgardener,org.Hs.eg.db,TxDb.Hsapiens.UCSC.hg38.knownGene |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | rigvf_1.2.2.tar.gz |
| Windows Binary (x86_64) | rigvf_1.1.3.zip |
| macOS Binary (x86_64) | rigvf_1.2.0.tgz |
| macOS Binary (arm64) | rigvf_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/rigvf |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/rigvf |
| Bioc Package Browser | https://code.bioconductor.org/browse/rigvf/ |
| Package Short Url | https://bioconductor.org/packages/rigvf/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.22 | Source Archive |