rTRM

This is thereleased version of rTRM; for the devel version, seerTRM.

Identification of Transcriptional Regulatory Modules from Protein-Protein Interaction Networks

Bioconductor version: Release (3.22)

rTRM identifies transcriptional regulatory modules (TRMs) from protein-protein interaction networks.

Author: Diego Diez

Maintainer: Diego Diez <diego10ruiz at gmail.com>

Citation (from within R, entercitation("rTRM")):

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))    install.packages("BiocManager")BiocManager::install("rTRM")

For older versions of R, please refer to the appropriateBioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rTRM")

biocViews	GeneRegulation,GraphAndNetwork,Network,Software,Transcription
Version	1.48.0
In Bioconductor since	BioC 2.13 (R-3.0) (12 years)
License	GPL-3
Depends	R (>= 2.10),igraph (>= 1.0)
Imports	methods,AnnotationDbi,DBI,RSQLite
System Requirements
URL	https://github.com/ddiez/rTRM
Bug Reports	https://github.com/ddiez/rTRM/issues

Suggests	RUnit,BiocGenerics,MotifDb,graph,PWMEnrich,biomaRt,Biostrings,BSgenome.Mmusculus.UCSC.mm8.masked,org.Hs.eg.db,org.Mm.eg.db,ggplot2,BiocStyle,knitr,rmarkdown
Linking To
Enhances
Depends On Me
Imports Me	rTRMui
Suggests Me
Links To Me
Build Report	Build Report

FollowInstallation instructions to use this package in your R session.

Source Package	rTRM_1.48.0.tar.gz
Windows Binary (x86_64)	rTRM_1.48.0.zip
macOS Binary (x86_64)	rTRM_1.48.0.tgz
macOS Binary (arm64)	rTRM_1.48.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/rTRM
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/rTRM
Bioc Package Browser	https://code.bioconductor.org/browse/rTRM/
Package Short Url	https://bioconductor.org/packages/rTRM/
Package Downloads Report	Download Stats