qsmooth
This is thereleased version of qsmooth; for the devel version, seeqsmooth.
Smooth quantile normalization
Bioconductor version: Release (3.22)
Smooth quantile normalization is a generalization of quantile normalization, which is average of the two types of assumptions about the data generation process: quantile normalization and quantile normalization between groups.
Author: Stephanie C. Hicks [aut, cre]
ORCID: 0000-0002-7858-0231, Kwame Okrah [aut], Koen Van den Berge [ctb], Hector Corrada Bravo [aut] ORCID: 0000-0002-1255-4444, Rafael Irizarry [aut] ORCID: 0000-0002-3944-4309
Maintainer: Stephanie C. Hicks <shicks19 at jhu.edu>
citation("qsmooth")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("qsmooth")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("qsmooth")| The qsmooth user's guide | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | BatchEffect,Microarray,MultipleComparison,Normalization,Preprocessing,RNASeq,Sequencing,Software |
| Version | 1.26.0 |
| In Bioconductor since | BioC 3.9 (R-3.6) (6.5 years) |
| License | GPL-3 |
| Depends | R (>= 4.0) |
| Imports | SummarizedExperiment, utils,sva, stats, methods, graphics,Hmisc |
| System Requirements | |
| URL |
See More
| Suggests | bodymapRat,quantro,knitr,rmarkdown,BiocStyle,testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | CleanUpRNAseq |
| Suggests Me | metamorphr |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | qsmooth_1.26.0.tar.gz |
| Windows Binary (x86_64) | qsmooth_1.26.0.zip |
| macOS Binary (x86_64) | qsmooth_1.26.0.tgz |
| macOS Binary (arm64) | qsmooth_1.26.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/qsmooth |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/qsmooth |
| Bioc Package Browser | https://code.bioconductor.org/browse/qsmooth/ |
| Package Short Url | https://bioconductor.org/packages/qsmooth/ |
| Package Downloads Report | Download Stats |