qpgraph
This is thereleased version of qpgraph; for the devel version, seeqpgraph.
Estimation of Genetic and Molecular Regulatory Networks from High-Throughput Genomics Data
Bioconductor version: Release (3.22)
Estimate gene and eQTL networks from high-throughput expression and genotyping assays.
Author: Robert Castelo [aut, cre], Alberto Roverato [aut]
Maintainer: Robert Castelo <robert.castelo at upf.edu>
Citation (from within R, enter
citation("qpgraph")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("qpgraph")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("qpgraph")| BasicUsersGuide.pdf | ||
| Estimate eQTL networks using qpgraph | R Script | |
| Reverse-engineer transcriptional regulatory networks using qpgraph | R Script | |
| Simulating molecular regulatory networks using qpgraph | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GeneExpression,GeneRegulation,GeneticVariability,Genetics,GraphAndNetwork,Microarray,NetworkInference,Pathways,SNP,Software,Transcription |
| Version | 2.44.0 |
| In Bioconductor since | BioC 2.4 (R-2.9) (16.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.5) |
| Imports | methods, parallel,Matrix (>= 1.5-0), grid,annotate,graph(>= 1.45.1),Biobase,S4Vectors,BiocParallel,AnnotationDbi,IRanges,Seqinfo,GenomicRanges,GenomicFeatures,mvtnorm,qtl,Rgraphviz |
| System Requirements | |
| URL | https://github.com/rcastelo/qpgraph |
| Bug Reports | https://github.com/rcastelo/qpgraph/issues |
See More
| Suggests | RUnit,BiocGenerics,BiocStyle,genefilter,org.EcK12.eg.db,rlecuyer,snow,Category,GOstats |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | clipper,MOSClip,topologyGSA |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | qpgraph_2.44.0.tar.gz |
| Windows Binary (x86_64) | qpgraph_2.44.0.zip |
| macOS Binary (x86_64) | qpgraph_2.44.0.tgz |
| macOS Binary (arm64) | qpgraph_2.44.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/qpgraph |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/qpgraph |
| Bioc Package Browser | https://code.bioconductor.org/browse/qpgraph/ |
| Package Short Url | https://bioconductor.org/packages/qpgraph/ |
| Package Downloads Report | Download Stats |