qcmetrics
This is thereleased version of qcmetrics; for the devel version, seeqcmetrics.
A Framework for Quality Control
Bioconductor version: Release (3.22)
The package provides a framework for generic quality control of data. It permits to create, manage and visualise individual or sets of quality control metrics and generate quality control reports in various formats.
Author: Laurent Gatto [aut, cre]
Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>
Citation (from within R, enter
citation("qcmetrics")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("qcmetrics")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("qcmetrics")| Index file for the qcmetrics package vignette | HTML | R Script |
| Reference Manual |
Details
| biocViews | ImmunoOncology,MassSpectrometry,Microarray,Proteomics,QualityControl,ReportWriting,Software,Visualization |
| Version | 1.48.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (12 years) |
| License | GPL-2 |
| Depends | R (>= 3.3) |
| Imports | Biobase, methods,knitr, tools,xtable,pander,S4Vectors |
| System Requirements | |
| URL | http://lgatto.github.io/qcmetrics/articles/qcmetrics.html |
| Bug Reports | https://github.com/lgatto/qcmetrics/issues |
See More
| Suggests | affy,MSnbase,ggplot2,lattice,mzR,BiocStyle,rmarkdown,markdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | MSstatsQC |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | qcmetrics_1.48.0.tar.gz |
| Windows Binary (x86_64) | qcmetrics_1.48.0.zip |
| macOS Binary (x86_64) | qcmetrics_1.48.0.tgz |
| macOS Binary (arm64) | qcmetrics_1.48.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/qcmetrics |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/qcmetrics |
| Bioc Package Browser | https://code.bioconductor.org/browse/qcmetrics/ |
| Package Short Url | https://bioconductor.org/packages/qcmetrics/ |
| Package Downloads Report | Download Stats |