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qPLEXanalyzer
This is thereleased version of qPLEXanalyzer; for the devel version, seeqPLEXanalyzer.
Tools for quantitative proteomics data analysis
Bioconductor version: Release (3.22)
Tools for TMT based quantitative proteomics data analysis.
Author: Matthew Eldridge [aut], Kamal Kishore [aut], Ashley Sawle [aut, cre]
Maintainer: Ashley Sawle <ads2202cu at gmail.com>
Citation (from within R, enter
citation("qPLEXanalyzer")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("qPLEXanalyzer")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("qPLEXanalyzer")| qPLEXanalyzer | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport,ImmunoOncology,MassSpectrometry,Normalization,Preprocessing,Proteomics,QualityControl,Software |
| Version | 1.27.0 |
| In Bioconductor since | BioC 3.8 (R-3.5) (7 years) |
| License | GPL-2 |
| Depends | R (>= 4.0),Biobase,MSnbase |
| Imports | assertthat,BiocGenerics,Biostrings,dplyr (>= 1.0.0),ggdendro,ggplot2, graphics, grDevices,IRanges,limma,magrittr,preprocessCore,purrr,RColorBrewer,readr,rlang,scales, stats,stringr,tibble,tidyr,tidyselect, utils |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/crukci-bioinformatics/qPLEXanalyzer/issues |
See More
| Suggests | patchwork,knitr,qPLEXdata,rmarkdown,statmod,testthat,UniProt.ws,vdiffr |
| Linking To | |
| Enhances | |
| Depends On Me | qPLEXdata |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | qPLEXanalyzer_1.27.0.tar.gz |
| Windows Binary (x86_64) | qPLEXanalyzer_1.27.0.zip |
| macOS Binary (x86_64) | qPLEXanalyzer_1.27.0.tgz |
| macOS Binary (arm64) | qPLEXanalyzer_1.27.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/qPLEXanalyzer |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/qPLEXanalyzer |
| Bioc Package Browser | https://code.bioconductor.org/browse/qPLEXanalyzer/ |
| Package Short Url | https://bioconductor.org/packages/qPLEXanalyzer/ |
| Package Downloads Report | Download Stats |