plyranges
This is thereleased version of plyranges; for the devel version, seeplyranges.
A fluent interface for manipulating GenomicRanges
Bioconductor version: Release (3.22)
A dplyr-like interface for interacting with the common Bioconductor classes Ranges and GenomicRanges. By providing a grammatical and consistent way of manipulating these classes their accessiblity for new Bioconductor users is hopefully increased.
Author: Stuart Lee [aut]
ORCID: 0000-0003-1179-8436, Michael Lawrence [aut, ctb], Dianne Cook [aut, ctb], Spencer Nystrom [ctb] ORCID: 0000-0003-1000-1579, Pierre-Paul Axisa [ctb], Michael Love [ctb, cre]
Maintainer: Michael Love <michaelisaiahlove at gmail.com>
citation("plyranges")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("plyranges")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("plyranges")| Introduction | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Coverage,DataRepresentation,Infrastructure,Software,WorkflowStep |
| Version | 1.30.1 |
| In Bioconductor since | BioC 3.7 (R-3.5) (7.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.5),BiocGenerics,IRanges(>= 2.12.0),GenomicRanges(>= 1.28.4),dplyr |
| Imports | methods,rlang (>= 0.2.0),magrittr,tidyselect (>= 1.0.0),rtracklayer,GenomicAlignments,Seqinfo,Rsamtools,S4Vectors(>= 0.23.10), utils |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/tidyomics/plyranges |
See More
| Suggests | knitr,BiocStyle,rmarkdown,testthat (>= 2.1.0),HelloRanges,HelloRangesData,BSgenome.Hsapiens.UCSC.hg19,pasillaBamSubset,covr,ggplot2 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | BOBaFIT,BUSpaRse,cfDNAPro,Damsel,GenomicPlot,InPAS,katdetectr,mariner,multicrispr,nearBynding,nullranges,plotgardener,plyinteractions,SingleMoleculeFootprinting,tidyomics,fluentGenomics |
| Suggests Me | EpiCompare,extraChIPs,memes,rigvf,svaNUMT,svaRetro,tidyCoverage,CTCF |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | plyranges_1.30.1.tar.gz |
| Windows Binary (x86_64) | plyranges_1.30.1.zip |
| macOS Binary (x86_64) | plyranges_1.30.1.tgz |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/plyranges |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/plyranges |
| Bioc Package Browser | https://code.bioconductor.org/browse/plyranges/ |
| Package Short Url | https://bioconductor.org/packages/plyranges/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.22 | Source Archive |