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pdInfoBuilder
This is thereleased version of pdInfoBuilder; for the devel version, seepdInfoBuilder.
Platform Design Information Package Builder
Bioconductor version: Release (3.22)
Builds platform design information packages. These consist of a SQLite database containing feature-level data such as x, y position on chip and featureSet ID. The database also incorporates featureSet-level annotation data. The products of this packages are used by the oligo pkg.
Author: Seth Falcon, Vince Carey, Matt Settles, Kristof de Beuf, Benilton Carvalho
Maintainer: Benilton Carvalho <benilton at unicamp.br>
citation("pdInfoBuilder")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("pdInfoBuilder")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pdInfoBuilder")| Building Annotation Packages with pdInfoBuilder for Use with the oligo Package | ||
| PDInfo Package Building Affymetrix Mapping Chips | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Annotation,Infrastructure,Software |
| Version | 1.74.0 |
| In Bioconductor since | BioC 2.0 (R-2.5) (18.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.2.0), methods,Biobase(>= 2.27.3),RSQLite (>= 1.0.0),affxparser(>= 1.39.4),oligo(>= 1.31.5) |
| Imports | Biostrings(>= 2.35.12),BiocGenerics(>= 0.13.11),DBI (>= 0.3.1),IRanges(>= 2.1.43),oligoClasses(>= 1.29.6),S4Vectors(>= 0.5.22) |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | maqcExpression4plex,aroma.affymetrix,maGUI |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | pdInfoBuilder_1.74.0.tar.gz |
| Windows Binary (x86_64) | pdInfoBuilder_1.74.0.zip (64-bit only) |
| macOS Binary (x86_64) | pdInfoBuilder_1.74.0.tgz |
| macOS Binary (arm64) | pdInfoBuilder_1.74.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/pdInfoBuilder |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/pdInfoBuilder |
| Bioc Package Browser | https://code.bioconductor.org/browse/pdInfoBuilder/ |
| Package Short Url | https://bioconductor.org/packages/pdInfoBuilder/ |
| Package Downloads Report | Download Stats |