omXplore
This is thereleased version of omXplore; for the devel version, seeomXplore.
Vizualization tools for 'omics' datasets with R
Bioconductor version: Release (3.22)
This package contains a collection of functions (written as shiny modules) for the visualisation and the statistical analysis of omics data. These plots can be displayed individually or embedded in a global Shiny module. Additionaly, it is possible to integrate third party modules to the main interface of the package omXplore.
Author: Samuel Wieczorek [aut, cre]
ORCID: 0000-0002-5016-1203, Thomas Burger [aut], Enora Fremy [ctb], Cyril Ariztegui [ctb]
Maintainer: Samuel Wieczorek <samuel.wieczorek at cea.fr>
citation("omXplore")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("omXplore")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("omXplore")| Adding third party plots | HTML | R Script |
| omXplore | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataRepresentation,GUI,MassSpectrometry,QualityControl,ShinyApps,Software |
| Version | 1.4.2 |
| In Bioconductor since | BioC 3.20 (R-4.4) (1 year) |
| License | Artistic-2.0 |
| Depends | R (>= 4.5.0), methods |
| Imports | DT,shiny,MSnbase,PSMatch,SummarizedExperiment,MultiAssayExperiment,shinyBS,shinyjs,shinyjqui,RColorBrewer,gplots,highcharter,visNetwork,tibble, grDevices, stats, utils,htmlwidgets,vioplot, graphics,FactoMineR,dendextend,dplyr,factoextra,tidyr,nipals |
| System Requirements | |
| URL | https://github.com/edyp-lab/omXplorehttps://edyp-lab.github.io/omXplore/ |
| Bug Reports | https://github.com/edyp-lab/omXplore/issues |
See More
| Suggests | knitr,rmarkdown,BiocStyle,testthat,Matrix,graph |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | omXplore_1.4.2.tar.gz |
| Windows Binary (x86_64) | omXplore_1.3.0.zip (64-bit only) |
| macOS Binary (x86_64) | omXplore_1.4.2.tgz |
| macOS Binary (arm64) | omXplore_1.4.2.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/omXplore |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/omXplore |
| Bioc Package Browser | https://code.bioconductor.org/browse/omXplore/ |
| Package Short Url | https://bioconductor.org/packages/omXplore/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.22 | Source Archive |