oligo
This is thereleased version of oligo; for the devel version, seeoligo.
Preprocessing tools for oligonucleotide arrays
Bioconductor version: Release (3.22)
A package to analyze oligonucleotide arrays (expression/SNP/tiling/exon) at probe-level. It currently supports Affymetrix (CEL files) and NimbleGen arrays (XYS files).
Author: Benilton Carvalho and Rafael Irizarry
Maintainer: Benilton Carvalho <benilton at unicamp.br>
Citation (from within R, enter
citation("oligo")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("oligo")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("oligo")| oligo User's Guide | |
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | DataImport,DifferentialExpression,ExonArray,GeneExpression,Microarray,OneChannel,Preprocessing,SNP,Software,TwoChannel |
| Version | 1.74.0 |
| In Bioconductor since | BioC 2.0 (R-2.5) (18.5 years) |
| License | LGPL (>= 2) |
| Depends | R (>= 3.2.0),BiocGenerics(>= 0.13.11),oligoClasses(>= 1.29.6),Biobase(>= 2.27.3),Biostrings(>= 2.35.12) |
| Imports | affyio(>= 1.35.0),affxparser(>= 1.39.4),DBI (>= 0.3.1),ff, graphics, methods,preprocessCore(>= 1.29.0),RSQLite (>= 1.0.0), splines, stats, stats4, utils,bit |
| System Requirements | |
| URL | https://github.com/benilton/oligo |
See More
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | oligo_1.74.0.tar.gz |
| Windows Binary (x86_64) | oligo_1.74.0.zip |
| macOS Binary (x86_64) | oligo_1.74.0.tgz |
| macOS Binary (arm64) | oligo_1.74.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/oligo |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/oligo |
| Bioc Package Browser | https://code.bioconductor.org/browse/oligo/ |
| Package Short Url | https://bioconductor.org/packages/oligo/ |
| Package Downloads Report | Download Stats |