ndexr
This is thereleased version of ndexr; for the devel version, seendexr.
NDEx R client library
Bioconductor version: Release (3.22)
This package offers an interface to NDEx servers, e.g. the public server at http://ndexbio.org/. It can retrieve and save networks via the API. Networks are offered as RCX object and as igraph representation.
Author: Florian Auer [cre, aut]
ORCID: 0000-0002-5320-8900, Frank Kramer [ctb], Alex Ishkin [ctb], Dexter Pratt [ctb]
Maintainer: Florian Auer <florian.auer at informatik.uni-augsburg.de>
citation("ndexr")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("ndexr")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ndexr")| NDExR Vignette | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DataImport,Network,Pathways,Software |
| Version | 1.32.0 |
| In Bioconductor since | BioC 3.6 (R-3.4) (8 years) |
| License | BSD_3_clause + fileLICENSE |
| Depends | RCX |
| Imports | httr,jsonlite,plyr,tidyr |
| System Requirements | |
| URL | https://github.com/frankkramer-lab/ndexr |
| Bug Reports | https://github.com/frankkramer-lab/ndexr/issues |
See More
| Suggests | BiocStyle,testthat,knitr,rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | ndexr_1.32.0.tar.gz |
| Windows Binary (x86_64) | ndexr_1.32.0.zip (64-bit only) |
| macOS Binary (x86_64) | ndexr_1.32.0.tgz |
| macOS Binary (arm64) | ndexr_1.32.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ndexr |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ndexr |
| Bioc Package Browser | https://code.bioconductor.org/browse/ndexr/ |
| Package Short Url | https://bioconductor.org/packages/ndexr/ |
| Package Downloads Report | Download Stats |