mspms
This is thereleased version of mspms; for the devel version, seemspms.
Tools for the analysis of MSP-MS data
Bioconductor version: Release (3.22)
This package provides functions for the analysis of data generated by the multiplex substrate profiling by mass spectrometry for proteases (MSP-MS) method. Data exported from upstream proteomics software is accepted as input and subsequently processed for analysis. Tools for statistical analysis, visualization, and interpretation of the data are provided.
Author: Charlie Bayne [aut, cre]
ORCID: 0000-0003-1870-5298
Maintainer: Charlie Bayne <baynec2 at gmail.com>
citation("mspms")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("mspms")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("mspms")| mspms_vignette | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | MassSpectrometry,Preprocessing,Proteomics,Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.21 (R-4.5) (0.5 years) |
| License | MIT + fileLICENSE |
| Depends | R (>= 4.4.0) |
| Imports | QFeatures,limma,SummarizedExperiment,magrittr,rlang,dplyr,purrr, stats,tidyr,stringr,ggplot2,ggseqlogo,heatmaply,readr,rstatix,tibble,ggpubr |
| System Requirements | |
| URL | https://github.com/baynec2/mspms |
| Bug Reports | https://github.com/baynec2/mspms/issues |
See More
| Suggests | knitr,testthat (>= 3.0.0),downloadthis,DT,rmarkdown,BiocStyle,imputeLCMD |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | mspms_1.2.0.tar.gz |
| Windows Binary (x86_64) | mspms_1.2.0.zip |
| macOS Binary (x86_64) | mspms_1.2.0.tgz |
| macOS Binary (arm64) | mspms_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/mspms |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/mspms |
| Bioc Package Browser | https://code.bioconductor.org/browse/mspms/ |
| Package Short Url | https://bioconductor.org/packages/mspms/ |
| Package Downloads Report | Download Stats |