microbiome

This is thereleased version of microbiome; for the devel version, seemicrobiome.

Microbiome Analytics

Bioconductor version: Release (3.22)

Utilities for microbiome analysis.

Author: Leo Lahti [aut, cre] ORCID: 0000-0001-5537-637X, Sudarshan Shetty [aut] ORCID: 0000-0001-7280-9915

Maintainer: Leo Lahti <leo.lahti at iki.fi>

Citation (from within R, entercitation("microbiome")):

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))    install.packages("BiocManager")BiocManager::install("microbiome")

For older versions of R, please refer to the appropriateBioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("microbiome")

biocViews	Metagenomics,Microbiome,Sequencing,Software,SystemsBiology
Version	1.32.0
In Bioconductor since	BioC 3.6 (R-3.4) (8 years)
License	BSD_2_clause + fileLICENSE
Depends	R (>= 3.6.0),phyloseq,ggplot2
Imports	Biostrings,compositions,dplyr,reshape2,Rtsne,scales, stats,tibble,tidyr, utils,vegan
System Requirements
URL	http://microbiome.github.io/microbiome
Bug Reports	https://github.com/microbiome/microbiome/issues

Suggests	BiocGenerics,BiocStyle,Cairo,knitr,rmarkdown,testthat
Linking To
Enhances
Depends On Me
Imports Me	DspikeIn,MicrobiomeSurv
Suggests Me	ANCOMBC,dar,zitools
Links To Me
Build Report	Build Report

FollowInstallation instructions to use this package in your R session.

Source Package	microbiome_1.32.0.tar.gz
Windows Binary (x86_64)	microbiome_1.32.0.zip
macOS Binary (x86_64)	microbiome_1.32.0.tgz
macOS Binary (arm64)	microbiome_1.32.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/microbiome
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/microbiome
Bioc Package Browser	https://code.bioconductor.org/browse/microbiome/
Package Short Url	https://bioconductor.org/packages/microbiome/
Package Downloads Report	Download Stats