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methylInheritance
This is thereleased version of methylInheritance; for the devel version, seemethylInheritance.
Permutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multiple Generations to a Treatment Effect
Bioconductor version: Release (3.22)
Permutation analysis, based on Monte Carlo sampling, for testing the hypothesis that the number of conserved differentially methylated elements, between several generations, is associated to an effect inherited from a treatment and that stochastic effect can be dismissed.
Author: Astrid Deschênes [cre, aut]
ORCID: 0000-0001-7846-6749, Pascal Belleau [aut] ORCID: 0000-0002-0802-1071, Arnaud Droit [aut]
Maintainer: Astrid Deschênes <adeschen at hotmail.com>
citation("methylInheritance")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("methylInheritance")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("methylInheritance")| Permutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multiple Generations to a Treatment Effect | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | BiologicalQuestion,DNAMethylation,DifferentialMethylation,Epigenetics,ImmunoOncology,MethylSeq,Sequencing,Software,StatisticalMethod,WholeGenome |
| Version | 1.34.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (8.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.5) |
| Imports | methylKit,BiocParallel,GenomicRanges,IRanges,S4Vectors, methods, parallel,ggplot2,gridExtra,rebus |
| System Requirements | |
| URL | https://github.com/adeschen/methylInheritance |
| Bug Reports | https://github.com/adeschen/methylInheritance/issues |
See More
| Suggests | BiocStyle,BiocGenerics,knitr,rmarkdown,RUnit,methInheritSim,testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | methInheritSim |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | methylInheritance_1.34.0.tar.gz |
| Windows Binary (x86_64) | methylInheritance_1.34.0.zip |
| macOS Binary (x86_64) | methylInheritance_1.34.0.tgz |
| macOS Binary (arm64) | methylInheritance_1.34.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/methylInheritance |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/methylInheritance |
| Bioc Package Browser | https://code.bioconductor.org/browse/methylInheritance/ |
| Package Short Url | https://bioconductor.org/packages/methylInheritance/ |
| Package Downloads Report | Download Stats |