methylCC
This is thereleased version of methylCC; for the devel version, seemethylCC.
Estimate the cell composition of whole blood in DNA methylation samples
Bioconductor version: Release (3.22)
A tool to estimate the cell composition of DNA methylation whole blood sample measured on any platform technology (microarray and sequencing).
Author: Stephanie C. Hicks [aut, cre]
ORCID: 0000-0002-7858-0231, Rafael Irizarry [aut] ORCID: 0000-0002-3944-4309
Maintainer: Stephanie C. Hicks <shicks19 at jhu.edu>
Citation (from within R, enter
citation("methylCC")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("methylCC")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("methylCC")| The methylCC user's guide | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DNAMethylation,MethylSeq,MethylationArray,Microarray,Sequencing,Software,WholeGenome |
| Version | 1.24.1 |
| In Bioconductor since | BioC 3.10 (R-3.6) (6 years) |
| License | GPL-3 |
| Depends | R (>= 3.6),FlowSorted.Blood.450k |
| Imports | Biobase,GenomicRanges,IRanges,S4Vectors,dplyr,magrittr,minfi,bsseq,quadprog, stats, utils,bumphunter,genefilter, methods,IlluminaHumanMethylation450kmanifest,IlluminaHumanMethylation450kanno.ilmn12.hg19 |
| System Requirements | |
| URL | https://github.com/stephaniehicks/methylCC/ |
| Bug Reports | https://github.com/stephaniehicks/methylCC/ |
See More
| Suggests | rmarkdown,knitr,testthat (>= 2.1.0),BiocGenerics,BiocStyle,tidyr,ggplot2 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | methylCC_1.24.1.tar.gz |
| Windows Binary (x86_64) | methylCC_1.24.0.zip |
| macOS Binary (x86_64) | methylCC_1.24.1.tgz |
| macOS Binary (arm64) | methylCC_1.24.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/methylCC |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/methylCC |
| Bioc Package Browser | https://code.bioconductor.org/browse/methylCC/ |
| Package Short Url | https://bioconductor.org/packages/methylCC/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.22 | Source Archive |