methInheritSim

This is thereleased version of methInheritSim; for the devel version, seemethInheritSim.

Simulating Whole-Genome Inherited Bisulphite Sequencing Data

Bioconductor version: Release (3.22)

Simulate a multigeneration methylation case versus control experiment with inheritance relation using a real control dataset.

Author: Pascal Belleau, Astrid Deschênes and Arnaud Droit

Maintainer: Pascal Belleau <pascal_belleau at hotmail.com>

Citation (from within R, entercitation("methInheritSim")):

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))    install.packages("BiocManager")BiocManager::install("methInheritSim")

For older versions of R, please refer to the appropriateBioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("methInheritSim")

Simulating Whole-Genome Inherited Bisulphite Sequencing Data	HTML	R Script
Reference Manual	PDF
README	Text
NEWS	Text

biocViews	BiologicalQuestion,DNAMethylation,DifferentialMethylation,Epigenetics,ImmunoOncology,MethylSeq,Sequencing,Software,StatisticalMethod,WholeGenome
Version	1.32.0
In Bioconductor since	BioC 3.6 (R-3.4) (8 years)
License	Artistic-2.0
Depends	R (>= 3.5.0)
Imports	methylKit,GenomicRanges,Seqinfo, parallel,BiocGenerics,S4Vectors, methods, stats,IRanges,msm
System Requirements
URL	https://github.com/belleau/methInheritSim
Bug Reports	https://github.com/belleau/methInheritSim/issues

Suggests	BiocStyle,knitr,rmarkdown,RUnit,methylInheritance
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	methylInheritance
Links To Me
Build Report	Build Report

FollowInstallation instructions to use this package in your R session.

Source Package	methInheritSim_1.32.0.tar.gz
Windows Binary (x86_64)	methInheritSim_1.32.0.zip
macOS Binary (x86_64)	methInheritSim_1.32.0.tgz
macOS Binary (arm64)	methInheritSim_1.32.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/methInheritSim
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/methInheritSim
Bioc Package Browser	https://code.bioconductor.org/browse/methInheritSim/
Package Short Url	https://bioconductor.org/packages/methInheritSim/
Package Downloads Report	Download Stats