metaMS
This is thereleased version of metaMS; for the devel version, seemetaMS.
MS-based metabolomics annotation pipeline
Bioconductor version: Release (3.22)
MS-based metabolomics data processing and compound annotation pipeline.
Author: Ron Wehrens [aut] (author of GC-MS part, Initial Maintainer), Pietro Franceschi [aut] (author of LC-MS part), Nir Shahaf [ctb], Matthias Scholz [ctb], Georg Weingart [ctb] (development of GC-MS approach), Elisabete Carvalho [ctb] (testing and feedback of GC-MS pipeline), Yann Guitton [ctb, cre]
ORCID: 0000-0002-4479-0636, Julien Saint-Vanne [ctb]
Maintainer: Yann Guitton <yann.guitton at gmail.com>
citation("metaMS")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("metaMS")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("metaMS")| runGC | R Script | |
| runLC | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ImmunoOncology,MassSpectrometry,Metabolomics,Software |
| Version | 1.46.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) (11.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 4.0), methods,CAMERA,xcms(>= 1.35) |
| Imports | Matrix, tools,robustbase,BiocGenerics, graphics, stats, utils |
| System Requirements | |
| URL | https://github.com/yguitton/metaMS |
See More
| Suggests | metaMSdata,RUnit |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | CluMSID |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | metaMS_1.46.0.tar.gz |
| Windows Binary (x86_64) | metaMS_1.46.0.zip |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/metaMS |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/metaMS |
| Bioc Package Browser | https://code.bioconductor.org/browse/metaMS/ |
| Package Short Url | https://bioconductor.org/packages/metaMS/ |
| Package Downloads Report | Download Stats |