mbkmeans
This is thereleased version of mbkmeans; for the devel version, seembkmeans.
Mini-batch K-means Clustering for Single-Cell RNA-seq
Bioconductor version: Release (3.22)
Implements the mini-batch k-means algorithm for large datasets, including support for on-disk data representation.
Author: Yuwei Ni [aut, cph], Davide Risso [aut, cre, cph], Stephanie Hicks [aut, cph], Elizabeth Purdom [aut, cph]
Maintainer: Davide Risso <risso.davide at gmail.com>
Citation (from within R, enter
citation("mbkmeans")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("mbkmeans")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("mbkmeans")| mbkmeans vignette | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Clustering,GeneExpression,RNASeq,Sequencing,SingleCell,Software,Transcriptomics |
| Version | 1.26.0 |
| In Bioconductor since | BioC 3.9 (R-3.6) (6.5 years) |
| License | MIT + fileLICENSE |
| Depends | R (>= 3.6) |
| Imports | methods,DelayedArray,Rcpp,S4Vectors,SingleCellExperiment,SummarizedExperiment,ClusterR,benchmarkme,Matrix,BiocParallel |
| System Requirements | C++11 |
| URL | |
| Bug Reports | https://github.com/drisso/mbkmeans/issues |
See More
| Suggests | beachmat,HDF5Array,Rhdf5lib,BiocStyle,TENxPBMCData,scater,DelayedMatrixStats,bluster,knitr,testthat,rmarkdown |
| Linking To | Rcpp,RcppArmadillo (>= 0.7.2),Rhdf5lib,beachmat,ClusterR |
| Enhances | |
| Depends On Me | OSCA.basic |
| Imports Me | clusterExperiment |
| Suggests Me | bluster,concordexR,scDblFinder |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | mbkmeans_1.26.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | mbkmeans_1.26.0.tgz |
| macOS Binary (arm64) | mbkmeans_1.26.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/mbkmeans |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/mbkmeans |
| Bioc Package Browser | https://code.bioconductor.org/browse/mbkmeans/ |
| Package Short Url | https://bioconductor.org/packages/mbkmeans/ |
| Package Downloads Report | Download Stats |