levi
This is thereleased version of levi; for the devel version, seelevi.
Landscape Expression Visualization Interface
Bioconductor version: Release (3.22)
The tool integrates data from biological networks with transcriptomes, displaying a heatmap with surface curves to evidence the altered regions.
Author: Rafael Pilan [aut], Isabelle Silva [ctb], Agnes Takeda [ctb], Jose Rybarczyk Filho [ctb, cre, ths]
Maintainer: Jose Luiz Rybarczyk Filho <jose.luiz at unesp.br>
Citation (from within R, enter
citation("levi")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("levi")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("levi")| Using levi | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GeneExpression,Network,Sequencing,Software |
| Version | 1.28.0 |
| In Bioconductor since | BioC 3.8 (R-3.5) (7 years) |
| License | GPL (>= 2) |
| Depends | |
| Imports | DT (>= 0.4),RColorBrewer (>= 1.1-2),colorspace (>= 1.3-2),dplyr (>= 0.7.4),ggplot2 (>= 2.2.1),httr (>= 1.3.1),igraph (>= 1.2.1),reshape2 (>= 1.4.3),shiny (>= 1.0.5),shinydashboard (>= 0.7.0),shinyjs (>= 1.0),xml2 (>= 1.2.0),knitr,Rcpp (>= 0.12.18), grid, grDevices, stats, utils,testthat, methods,rmarkdown |
| System Requirements | |
| URL |
See More
| Suggests | rmarkdown,BiocStyle |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | levi_1.28.0.tar.gz |
| Windows Binary (x86_64) | levi_1.28.0.zip |
| macOS Binary (x86_64) | levi_1.28.0.tgz |
| macOS Binary (arm64) | levi_1.28.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/levi |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/levi |
| Bioc Package Browser | https://code.bioconductor.org/browse/levi/ |
| Package Short Url | https://bioconductor.org/packages/levi/ |
| Package Downloads Report | Download Stats |