igblastr
This is thereleased version of igblastr; for the devel version, seeigblastr.
User-friendly R Wrapper to IgBLAST
Bioconductor version: Release (3.22)
The igblastr package provides functions to conveniently install and use a local IgBLAST installation from within R. IgBLAST is described at
Author: Hervé Pagès [aut, cre]
ORCID: 0009-0002-8272-4522, Ollivier Hyrien [aut, fnd] ORCID: 0000-0003-1909-2542, Kellie MacPhee [ctb] ORCID: 0009-0008-0993-4009, Michael Duff [ctb] ORCID: 0009-0008-4279-0756, Jason Taylor [ctb]
Maintainer: Hervé Pagès <hpages.on.github at gmail.com>
citation("igblastr")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("igblastr")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("igblastr")| igblastr overview | HTML | R Script |
| Reference Manual |
Details
| biocViews | CellBiology,ImmunoOncology,Immunogenetics,Immunology,Software |
| Version | 1.0.5 |
| In Bioconductor since | BioC 3.22 (R-4.5) (< 6 months) |
| License | Artistic-2.0 |
| Depends | R (>= 4.2.0),tibble,Biostrings |
| Imports | methods, utils, stats, tools,R.utils,curl,httr,xml2,rvest,xtable,jsonlite,S4Vectors,IRanges,GenomeInfoDb(>= 1.46.2) |
| System Requirements | |
| URL | https://bioconductor.org/packages/igblastr |
| Bug Reports | https://github.com/HyrienLab/igblastr/issues |
See More
| Suggests | GenomicAlignments, parallel,testthat,knitr,rmarkdown,BiocStyle,ggplot2,dplyr,scales,ggseqlogo |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | igblastr_1.0.5.tar.gz |
| Windows Binary (x86_64) | igblastr_0.99.12.zip |
| macOS Binary (x86_64) | igblastr_1.0.5.tgz |
| macOS Binary (arm64) | igblastr_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/igblastr |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/igblastr |
| Bioc Package Browser | https://code.bioconductor.org/browse/igblastr/ |
| Package Short Url | https://bioconductor.org/packages/igblastr/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.22 | Source Archive |