iCNV
This is thereleased version of iCNV; for the devel version, seeiCNV.
Integrated Copy Number Variation detection
Bioconductor version: Release (3.22)
Integrative copy number variation (CNV) detection from multiple platform and experimental design.
Author: Zilu Zhou, Nancy Zhang
Maintainer: Zilu Zhou <zhouzilu at pennmedicine.upenn.edu>
Citation (from within R, enter
citation("iCNV")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("iCNV")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("iCNV")| iCNV Vignette | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CopyNumberVariation,ExomeSeq,HiddenMarkovModel,ImmunoOncology,SNP,Software,WholeGenome |
| Version | 1.30.0 |
| In Bioconductor since | BioC 3.7 (R-3.5) (7.5 years) |
| License | GPL-2 |
| Depends | R (>= 3.3.1),CODEX |
| Imports | fields,ggplot2,truncnorm,tidyr,data.table,dplyr, grDevices, graphics, stats, utils,rlang |
| System Requirements | |
| URL |
See More
| Suggests | knitr,rmarkdown,WES.1KG.WUGSC |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | iCNV_1.30.0.tar.gz |
| Windows Binary (x86_64) | iCNV_1.30.0.zip |
| macOS Binary (x86_64) | iCNV_1.30.0.tgz |
| macOS Binary (arm64) | iCNV_1.30.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/iCNV |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/iCNV |
| Bioc Package Browser | https://code.bioconductor.org/browse/iCNV/ |
| Package Short Url | https://bioconductor.org/packages/iCNV/ |
| Package Downloads Report | Download Stats |