h5vc

This is thereleased version of h5vc; for the devel version, seeh5vc.

Managing alignment tallies using a hdf5 backend

Bioconductor version: Release (3.22)

This package contains functions to interact with tally data from NGS experiments that is stored in HDF5 files.

Author: Paul Theodor Pyl

Maintainer: Paul Theodor Pyl <paul.theodor.pyl at gmail.com>

Citation (from within R, entercitation("h5vc")):

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))    install.packages("BiocManager")BiocManager::install("h5vc")

For older versions of R, please refer to the appropriateBioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("h5vc")

Building a minimal genome browser with h5vc and shiny	HTML	R Script
h5vc -- Tour	HTML	R Script
Reference Manual	PDF

biocViews	Software
Version	2.44.0
In Bioconductor since	BioC 2.13 (R-3.0) (12 years)
License	GPL (>= 3)
Depends	grid,gridExtra,ggplot2
Imports	rhdf5,reshape,S4Vectors,IRanges,Biostrings,Rsamtools(>= 2.13.1), methods,GenomicRanges,abind,BiocParallel,BatchJobs,h5vcData,GenomeInfoDb
System Requirements	GNU make
URL

Suggests	knitr,locfit,BSgenome.Hsapiens.UCSC.hg19,biomaRt,BSgenome.Hsapiens.NCBI.GRCh38,RUnit,BiocGenerics,rmarkdown
Linking To	Rhtslib(>= 1.99.1)
Enhances
Depends On Me
Imports Me
Suggests Me	h5vcData
Links To Me
Build Report	Build Report

FollowInstallation instructions to use this package in your R session.

Source Package	h5vc_2.44.0.tar.gz
Windows Binary (x86_64)	h5vc_2.44.0.zip (64-bit only)
macOS Binary (x86_64)	h5vc_2.44.0.tgz
macOS Binary (arm64)	h5vc_2.44.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/h5vc
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/h5vc
Bioc Package Browser	https://code.bioconductor.org/browse/h5vc/
Package Short Url	https://bioconductor.org/packages/h5vc/
Package Downloads Report	Download Stats