graph

This is thereleased version of graph; for the devel version, seegraph.

graph: A package to handle graph data structures

DOI: 10.18129/B9.bioc.graph

Bioconductor version: Release (3.22)

A package that implements some simple graph handling capabilities.

Author: R Gentleman [aut], Elizabeth Whalen [aut], W Huber [aut], S Falcon [aut], Jeff Gentry [aut], Paul Shannon [aut], Halimat C. Atanda [ctb] (Converted 'MultiGraphClass' and 'GraphClass' vignettes from Sweave to RMarkdown / HTML.), Paul Villafuerte [ctb] (Converted vignettes from Sweave to RMarkdown / HTML.), Aliyu Atiku Mustapha [ctb] (Converted 'Graph' vignette from Sweave to RMarkdown / HTML.), Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, entercitation("graph")):

Installation

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))    install.packages("BiocManager")BiocManager::install("graph")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("graph")

Attributes for Graph Objects	HTML	R Script
clusterGraph and distGraph	HTML	R Script
Graph Design	HTML	R Script
graphBAM and MultiGraph Classes	HTML	R Script
How to use the graph package	HTML	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	GraphAndNetwork,Software
Version	1.88.1
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 20.5 years)
License	Artistic-2.0
Depends	R (>= 2.10), methods,BiocGenerics(>= 0.13.11)
Imports	stats, stats4, utils
System Requirements
URL

Suggests	SparseM (>= 0.36),XML,RBGL,RUnit,cluster,BiocStyle,knitr
Linking To
Enhances	Rgraphviz
Depends On Me	apComplex,biocGraph,BioMVCClass,BioNet,BLMA,CellNOptR,clipper,CNORfeeder,EnrichmentBrowser,GOstats,GraphAT,GSEABase,hypergraph,keggorthology,MineICA,pathRender,RbcBook1,RBGL,RCyjs,Rgraphviz,ROntoTools,SRAdb,topGO,vtpnet,DLBCL,SNAData,yeastExpData,cyjShiny,dlsem,graphpcor,gridGraphviz,PairViz,PerfMeas
Imports Me	AnnotationHubData,BgeeDB,BiocCheck,BiocFHIR,biocGraph,BiocPkgTools,biocViews,bnem,CAMERA,Category,categoryCompare,chimeraviz,ChIPpeakAnno,CHRONOS,consICA,CytoML,DEGraph,DEsubs,EnrichDO,epiNEM,EventPointer,fgga,flowClust,flowWorkspace,gage,GeneNetworkBuilder,GenomicInteractionNodes,GraphAT,graphite,hyperdraw,KEGGgraph,MIRit,mnem,MOSClip,NCIgraph,netresponse,OncoSimulR,ontoProc,openCyto,oposSOM,OrganismDbi,pathview,qpgraph,RCy3,RGraph2js,rsbml,scGraphVerse,SplicingGraphs,Streamer,VariantFiltering,BioPlex,abn,BayesNetBP,BCDAG,BiDAG,BNrich,ceg,CePa,classGraph,clustNet,CodeDepends,cogmapr,ggm,gridDebug,HEMDAG,net4pg,netgsa,NetPreProc,pcalg,pcgen,rags2ridges,RANKS,RCPA,rsolr,rSpectral,SEMgraph,stablespec,topologyGSA,tpc,unifDAG
Suggests Me	anansi,AnnotationDbi,DAPAR,DEGraph,EBcoexpress,ecolitk,gwascat,KEGGlincs,MLP,NetPathMiner,omXplore,rBiopaxParser,RCX,rTRM,S4Vectors,SPIA,VariantTools,arulesViz,bnlearn,bnstruct,bsub,caugi,ChoR,gbutils,GeneNet,gMCP,lava,loon,maGUI,netmeta,psych,rEMM,rPref,sisal,textplot,tidygraph,zenplots
Links To Me
Build Report	Build Report

Package Archives

FollowInstallation instructions to use this package in your R session.

Source Package	graph_1.88.1.tar.gz
Windows Binary (x86_64)	graph_1.88.0.zip
macOS Binary (x86_64)	graph_1.88.1.tgz
macOS Binary (arm64)	graph_1.88.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/graph
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/graph
Bioc Package Browser	https://code.bioconductor.org/browse/graph/
Package Short Url	https://bioconductor.org/packages/graph/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.22	Source Archive

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