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goSorensen
This is thereleased version of goSorensen; for the devel version, seegoSorensen.
Statistical inference based on the Sorensen-Dice dissimilarity and the Gene Ontology (GO)
Bioconductor version: Release (3.22)
This package implements inferential methods to compare gene lists in terms of their biological meaning as expressed in the GO. The compared gene lists are characterized by cross-tabulation frequency tables of enriched GO items. Dissimilarity between gene lists is evaluated using the Sorensen-Dice index. The fundamental guiding principle is that two gene lists are taken as similar if they share a great proportion of common enriched GO items.
Author: Pablo Flores [aut, cre]
ORCID: 0000-0002-7156-8547, Jordi Ocana [aut, ctb] (0000-0002-4736-699), Alexandre Sanchez-Pla [ctb] ORCID: 0000-0002-8673-7737, Miquel Salicru [ctb] ORCID: 0000-0001-9644-5626
Maintainer: Pablo Flores <p_flores at espoch.edu.ec>
citation("goSorensen")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("goSorensen")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("goSorensen")| An Introduction to goSorensen R-Package | HTML | R Script |
| Working with te Irrelevance-threshold Matrix of Dissimilarities. | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Annotation,Clustering,GO,GeneExpression,GeneSetEnrichment,GraphAndNetwork,KEGG,Microarray,MultipleComparison,Pathways,Reactome,Software |
| Version | 1.12.0 |
| In Bioconductor since | BioC 3.16 (R-4.2) (3 years) |
| License | GPL-3 |
| Depends | R (>= 4.4) |
| Imports | clusterProfiler,goProfiles,org.Hs.eg.db, parallel, stats,stringr |
| System Requirements | |
| URL |
See More
| Suggests | BiocManager,BiocStyle,knitr,rmarkdown,org.At.tair.db,org.Ag.eg.db,org.Bt.eg.db,org.Ce.eg.db,org.Cf.eg.db,org.Dm.eg.db,org.Dr.eg.db,org.EcSakai.eg.db,org.EcK12.eg.db,org.Gg.eg.db,org.Mm.eg.db,org.Mmu.eg.db,org.Rn.eg.db,org.Sc.sgd.db,org.Ss.eg.db,org.Pt.eg.db,org.Xl.eg.db,GO.db,ggplot2,ggrepel,DT,magick |
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| Enhances | |
| Depends On Me | |
| Imports Me | |
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| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | goSorensen_1.12.0.tar.gz |
| Windows Binary (x86_64) | goSorensen_1.12.0.zip |
| macOS Binary (x86_64) | goSorensen_1.12.0.tgz |
| macOS Binary (arm64) | goSorensen_1.12.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/goSorensen |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/goSorensen |
| Bioc Package Browser | https://code.bioconductor.org/browse/goSorensen/ |
| Package Short Url | https://bioconductor.org/packages/goSorensen/ |
| Package Downloads Report | Download Stats |