gDRimport
This is thereleased version of gDRimport; for the devel version, seegDRimport.
Package for handling the import of dose-response data
Bioconductor version: Release (3.22)
The package is a part of the gDR suite. It helps to prepare raw drug response data for downstream processing. It mainly contains helper functions for importing/loading/validating dose-response data provided in different file formats.
Author: Arkadiusz Gladki [aut, cre]
ORCID: 0000-0002-7059-6378, Bartosz Czech [aut] ORCID: 0000-0002-9908-3007, Marc Hafner [aut] ORCID: 0000-0003-1337-7598, Sergiu Mocanu [aut], Dariusz Scigocki [aut], Allison Vuong [aut], Luca Gerosa [aut] ORCID: 0000-0001-6805-9410, Janina Smola [aut]
Maintainer: Arkadiusz Gladki <gladki.arkadiusz at gmail.com>
citation("gDRimport")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("gDRimport")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("gDRimport")| Converting a gDR-generated MultiAssayExperiment object into a PharmacoSet | HTML | R Script |
| Converting PharmacoSet Drug Response Data into gDR object | HTML | R Script |
| gDRimport | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport,Infrastructure,Software |
| Version | 1.8.1 |
| In Bioconductor since | BioC 3.18 (R-4.3) (2 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.2) |
| Imports | assertthat,BumpyMatrix,checkmate,CoreGx,PharmacoGx,data.table,futile.logger,gDRutils(>= 1.7.1),magrittr, methods,MultiAssayExperiment,readxl,rio,S4Vectors, stats,stringi,SummarizedExperiment,tibble, tools, utils,XML,yaml,openxlsx |
| System Requirements | |
| URL | https://github.com/gdrplatform/gDRimporthttps://gdrplatform.github.io/gDRimport/ |
| Bug Reports | https://github.com/gdrplatform/gDRimport/issues |
See More
| Suggests | BiocStyle,gDRtestData(>= 1.7.1),gDRstyle(>= 1.7.1),knitr,purrr,qs,testthat |
| Linking To | |
| Enhances | |
| Depends On Me | gDR |
| Imports Me | |
| Suggests Me | gDRcore |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | gDRimport_1.8.1.tar.gz |
| Windows Binary (x86_64) | gDRimport_1.8.0.zip |
| macOS Binary (x86_64) | gDRimport_1.8.1.tgz |
| macOS Binary (arm64) | gDRimport_1.8.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/gDRimport |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/gDRimport |
| Bioc Package Browser | https://code.bioconductor.org/browse/gDRimport/ |
| Package Short Url | https://bioconductor.org/packages/gDRimport/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.22 | Source Archive |