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flowPloidy

This is thereleased version of flowPloidy; for the devel version, seeflowPloidy.

Analyze flow cytometer data to determine sample ploidy

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DOI: 10.18129/B9.bioc.flowPloidy


Bioconductor version: Release (3.22)

Determine sample ploidy via flow cytometry histogram analysis. Reads Flow Cytometry Standard (FCS) files via the flowCore bioconductor package, and provides functions for determining the DNA ploidy of samples based on internal standards.

Author: Tyler Smith <tyler at plantarum.ca>

Maintainer: Tyler Smith <tyler at plantarum.ca>

Citation (from within R, entercitation("flowPloidy")):

Installation

To install this package, start R (version "4.5") and enter:

if (!require("BiocManager", quietly = TRUE))    install.packages("BiocManager")BiocManager::install("flowPloidy")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowPloidy")
flowPloidy: FCM HistogramsPDFR Script
flowPloidy: Getting StartedPDFR Script
Reference ManualPDF
NEWSText

Need some help? Ask on the Bioconductor Support site!

Details

biocViewsFlowCytometry,GUI,Regression,Software,Visualization
Version1.36.0
In Bioconductor sinceBioC 3.4 (R-3.3) (9 years)
LicenseGPL-3
Depends
ImportsflowCore,car,caTools,knitr,rmarkdown,minpack.lm,shiny, methods, graphics, stats, utils
System Requirements
URLhttps://github.com/plantarum/flowPloidy
Bug Reportshttps://github.com/plantarum/flowPloidy/issues
See More
SuggestsflowPloidyData,testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build ReportBuild Report

Package Archives

FollowInstallation instructions to use this package in your R session.

Source PackageflowPloidy_1.36.0.tar.gz
Windows Binary (x86_64) flowPloidy_1.36.0.zip
macOS Binary (x86_64)flowPloidy_1.36.0.tgz
macOS Binary (arm64)
Source Repositorygit clone https://git.bioconductor.org/packages/flowPloidy
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/flowPloidy
Bioc Package Browserhttps://code.bioconductor.org/browse/flowPloidy/
Package Short Urlhttps://bioconductor.org/packages/flowPloidy/
Package Downloads ReportDownload Stats

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