flowGraph
This is thereleased version of flowGraph; for the devel version, seeflowGraph.
Identifying differential cell populations in flow cytometry data accounting for marker frequency
Bioconductor version: Release (3.22)
Identifies maximal differential cell populations in flow cytometry data taking into account dependencies between cell populations; flowGraph calculates and plots SpecEnr abundance scores given cell population cell counts.
Author: Alice Yue [aut, cre]
Maintainer: Alice Yue <aya43 at sfu.ca>
Citation (from within R, enter
citation("flowGraph")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("flowGraph")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("flowGraph")| flowGraph | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CellBasedAssays,FlowCytometry,ImmunoOncology,Software,StatisticalMethod,Visualization |
| Version | 1.18.0 |
| In Bioconductor since | BioC 3.13 (R-4.1) (4.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.1) |
| Imports | effsize,furrr,future,purrr,ggiraph,ggrepel,ggplot2,igraph,Matrix,matrixStats, stats, utils,visNetwork,htmlwidgets, grDevices, methods,stringr,stringi,Rdpack,data.table (>= 1.9.5),gridExtra |
| System Requirements | |
| URL | https://github.com/aya49/flowGraph |
| Bug Reports | https://github.com/aya49/flowGraph/issues |
See More
| Suggests | BiocStyle,dplyr,knitr,rmarkdown,testthat (>= 2.1.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | flowGraph_1.18.0.tar.gz |
| Windows Binary (x86_64) | flowGraph_1.18.0.zip |
| macOS Binary (x86_64) | flowGraph_1.18.0.tgz |
| macOS Binary (arm64) | flowGraph_1.18.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/flowGraph |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/flowGraph |
| Bioc Package Browser | https://code.bioconductor.org/browse/flowGraph/ |
| Package Short Url | https://bioconductor.org/packages/flowGraph/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.22 | Source Archive |