fCI
This is thereleased version of fCI; for the devel version, seefCI.
f-divergence Cutoff Index for Differential Expression Analysis in Transcriptomics and Proteomics
DOI: 10.18129/B9.bioc.fCI
Bioconductor version: Release (3.22)
(f-divergence Cutoff Index), is to find DEGs in the transcriptomic & proteomic data, and identify DEGs by computing the difference between the distribution of fold-changes for the control-control and remaining (non-differential) case-control gene expression ratio data. fCI provides several advantages compared to existing methods.
Author: Shaojun Tang
Maintainer: Shaojun Tang <tangshao2008 at gmail.com>
citation("fCI")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("fCI")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("fCI")| fCI | HTML | R Script |
| Reference Manual |
Details
| biocViews | Proteomics,Software |
| Version | 1.40.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (10 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.1),FNN,psych,gtools,zoo,rgl, grid,VennDiagram |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | knitr,rmarkdown,BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | fCI_1.40.0.tar.gz |
| Windows Binary (x86_64) | fCI_1.40.0.zip |
| macOS Binary (x86_64) | fCI_1.40.0.tgz |
| macOS Binary (arm64) | fCI_1.40.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/fCI |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/fCI |
| Bioc Package Browser | https://code.bioconductor.org/browse/fCI/ |
| Package Short Url | https://bioconductor.org/packages/fCI/ |
| Package Downloads Report | Download Stats |