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epivizrStandalone
This is thereleased version of epivizrStandalone; for the devel version, seeepivizrStandalone.
Run Epiviz Interactive Genomic Data Visualization App within R
Bioconductor version: Release (3.22)
This package imports the epiviz visualization JavaScript app for genomic data interactive visualization. The 'epivizrServer' package is used to provide a web server running completely within R. This standalone version allows to browse arbitrary genomes through genome annotations provided by Bioconductor packages.
Author: Hector Corrada Bravo, Jayaram Kancherla
Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>
citation("epivizrStandalone")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("epivizrStandalone")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("epivizrStandalone")| Introduction to epivizrStandalone | HTML |
| Reference Manual | |
| NEWS | Text |
| LICENSE | Text |
Details
| biocViews | GUI,Infrastructure,Software,Visualization |
| Version | 1.38.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (9.5 years) |
| License | MIT + fileLICENSE |
| Depends | R (>= 3.2.3),epivizr(>= 2.3.6), methods |
| Imports | git2r,epivizrServer,Seqinfo,BiocGenerics,GenomicFeatures,S4Vectors |
| System Requirements | |
| URL |
See More
| Suggests | testthat,knitr,rmarkdown,OrganismDbi(>= 1.13.9),Mus.musculus,Biobase,BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | scTreeViz |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | epivizrStandalone_1.38.0.tar.gz |
| Windows Binary (x86_64) | epivizrStandalone_1.38.0.zip |
| macOS Binary (x86_64) | epivizrStandalone_1.38.0.tgz |
| macOS Binary (arm64) | epivizrStandalone_1.38.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/epivizrStandalone |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/epivizrStandalone |
| Bioc Package Browser | https://code.bioconductor.org/browse/epivizrStandalone/ |
| Package Short Url | https://bioconductor.org/packages/epivizrStandalone/ |
| Package Downloads Report | Download Stats |