covEB
This is thereleased version of covEB; for the devel version, seecovEB.
Empirical Bayes estimate of block diagonal covariance matrices
Bioconductor version: Release (3.22)
Using bayesian methods to estimate correlation matrices assuming that they can be written and estimated as block diagonal matrices. These block diagonal matrices are determined using shrinkage parameters that values below this parameter to zero.
Author: C. Pacini
Maintainer: C. Pacini <clarepacini at gmail.com>
Citation (from within R, enter
citation("covEB")):Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager")BiocManager::install("covEB")For older versions of R, please refer to the appropriateBioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("covEB")| covEB | R Script | |
| Reference Manual |
Details
| biocViews | Bayesian,GeneExpression,ImmunoOncology,Microarray,Preprocessing,RNASeq,Software,StatisticalMethod |
| Version | 1.36.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (9 years) |
| License | GPL-3 |
| Depends | R (>= 3.3),mvtnorm,igraph,gsl,Biobase, stats,LaplacesDemon,Matrix |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | curatedBladderData |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
FollowInstallation instructions to use this package in your R session.
| Source Package | covEB_1.36.0.tar.gz |
| Windows Binary (x86_64) | covEB_1.36.0.zip |
| macOS Binary (x86_64) | covEB_1.36.0.tgz |
| macOS Binary (arm64) | covEB_1.36.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/covEB |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/covEB |
| Bioc Package Browser | https://code.bioconductor.org/browse/covEB/ |
| Package Short Url | https://bioconductor.org/packages/covEB/ |
| Package Downloads Report | Download Stats |